Publications
Peer-reviewed work from our scientists.
A selection of papers from our scientists on AI for biology, multi-omics modelling and bioprocess engineering.
2026 · Research
Digitalisation and automation in smart biomanufacturing: uncertainties, challenges and early pathways towards safe and sustainable design
Alexandra Müller, Zoë Robaey, Sandra Youssef, Vitor A. P. Martins dos Santos, Enrique Asin-Garcia
New Biotechnology, 93:378–391
2025 · Review
How did we get there? AI applications to biological networks and sequences
Marco Anteghini, Francesco Gualdi, Baldo Oliva
Computers in Biology and Medicine, 190:110064
2025 · Editorial
Response to Letter to Editor by A. Derbalah et al.: the role of automation in enhancing reproducibility and interoperability of PBPK models
Vítor A. P. Martins dos Santos et al.
Briefings in Bioinformatics, 26(1)
2025 · Research
Combinatorial engineering pinpoints shikimate pathway bottlenecks in para-aminobenzoic acid production in Pseudomonas putida
Marco A. Campos-Magaña, Sara Moreno-Paz, Maria Martin-Pascual, Vitor A. P. Martins dos Santos, Luis Garcia-Morales, Maria Suarez-Diez
Journal of Biological Engineering, 19:81
2025 · Methods
A Rapid and Cost-Effective Pipeline to Identify and Capture BGCs From Bacterial Draft Genomes
Marco Campos-Magaña, Vitor Martins dos Santos, Luis Garcia-Morales
Bio-Protocol, 15(24)
2024 · Research
Novel multi-omics deconfounding variational autoencoders can obtain meaningful disease subtyping
Zuqi Li, Sonja Katz, Edoardo Saccenti, David W. Fardo, Peter Claes, Vítor A. P. Martins dos Santos, Kristel Van Steen, Gennady V. Roshchupkin
Briefings in Bioinformatics, 25(6)
2023 · Research
A tunable metabolic valve for precise growth control and increased product formation in Pseudomonas putida
Christos Batianis, Rik P. van Rosmalen, Monika Major, Cheyenne van Ee, Alexandros Kasiotakis, Ruud A. Weusthuis, Vitor A. P. Martins dos Santos
Metabolic Engineering
2023 · Perspective
Paving the way for synthetic C1-metabolism in Pseudomonas putida through the reductive glycine pathway
Lyon Bruinsma, Sebastian Wenk, Nico J. Claassens, Vitor A. P. Martins dos Santos
Metabolic Engineering
2022 · Research
OrganelX web server for sub-peroxisomal and sub-mitochondrial protein localization and peroxisomal target signal detection
Marco Anteghini, Asmaa Haja, Vitor A. P. Martins dos Santos, Lambert Schomaker, Edoardo Saccenti
Computational and Structural Biotechnology Journal
2021 · Research
In-Pero: Exploiting deep learning embeddings of protein sequences to predict the localisation of peroxisomal proteins
Marco Anteghini, Vitor Martins dos Santos, Edoardo Saccenti
International Journal of Molecular Sciences, 22(12):6409